PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10415_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 295aa    MW: 33599.2 Da    PI: 8.5488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10415_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.8e-1098164162
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvlt 62 
                     f+k+l +sdv++ gr+v+pkkfae++   +++++++ + ++d +  + W++k+++  ++++++y+++
  Neem_10415_f_2  98 FEKQLQNSDVSSAGRIVIPKKFAETNlpILNEKGGFWMNFNDMDYpQIWTFKFRFwpNNRGRMYLFE 164
                     99**************************7778899*******6666*******99655555557765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-1695214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-1296164IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-1296229No hitNo description
SMARTSM010190.006898194IPR003340B3 DNA binding domain
PfamPF023622.8E-798164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVIISEFGDV VLTPGKPATG DQVNQGGGNR EPPAAGSSRN CEYRRRASRR QNHRFAPDNP  60
LVFQHRLPRL PLQPPPAPPV RLYFSLQEIN PFVMRFLFEK QLQNSDVSSA GRIVIPKKFA  120
ETNLPILNEK GGFWMNFNDM DYPQIWTFKF RFWPNNRGRM YLFENASGLK SPASSQSSTF  180
LLLNAMQLIC CFTENLPGEF TRKYCLELGD YLMVFKDDIN GAYLVRARKK AAYVPNGAMG  240
NNANASYPNM EKYLRYGDNN NNQHDFRDGP TPDYAHLVMT PCCESLDLDL SEFLG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387151.13e-71PREDICTED: uncharacterized protein LOC107177608
TrEMBLV4TQE16e-71V4TQE1_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2275334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.17e-29B3 family protein